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1

Species dependence of enzyme-substrate encounter rates for triose phosphate isomerases

Rebecca C. Wade, Razif R. Gabdoulline, Brock A. Luty

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 569 KB

english, 1998

2

Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity

Niklas Blomberg, Razif R. Gabdoulline, Michael Nilges, Rebecca C. Wade

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 364 KB

english, 1999

3

On the protein–protein diffusional encounter complex

Razif R. Gabdoulline, Rebecca C. Wade

Journal:

Journal of Molecular Recognition

Year:

1999

Language:

english

File:

PDF, 231 KB

english, 1999

4

Effects of the cutoff center on the mean potential and pair distribution functions in liquid water

Razif R. Gabdoulline, Chong Zheng

Journal:

Journal of Computational Chemistry

Year:

1995

Language:

english

File:

PDF, 455 KB

english, 1995

5

Excited states of strongly coupled bound polarons

Razif R. Gabdoulline

Journal:

Physics Letters A

Year:

1994

Language:

english

File:

PDF, 336 KB

english, 1994

6

Molecular origin of the internal dipole potential in lipid bilayers: role of the electrostatic potential of water

Razif R. Gabdoulline, Chong Zheng, Garret Vanderkooi

Journal:

Chemistry and Physics of Lipids

Year:

1996

Language:

english

File:

PDF, 605 KB

english, 1996

7

The mean electrostatic potential difference between liquid water and vacuum by MD simulation

Razif R. Gabdoulline, Chong Zheng, Garret Vanderkooi

Journal:

Journal of Molecular Liquids

Year:

1997

Language:

english

File:

PDF, 452 KB

english, 1997

8

Protein–protein docking by simulating the process of association subject to biochemical constraints

Domantas Motiejunas, Razif Gabdoulline, Ting Wang, Anna Feldman-Salit, Tim Johann, Peter J. Winn, Rebecca C. Wade

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 355 KB

english, 2008

9

Classification of auxin plant hormones by interaction property similarity indices

Sanja Tomić, Razif R. Gabdoulline, Biserka Kojić-Prodić, Rebecca C. Wade

Journal:

Journal of Computer-Aided Molecular Design

Year:

1998

Language:

english

File:

PDF, 317 KB

english, 1998

10

Bridging from molecular simulation to biochemical networks

Matthias Stein, Razif R Gabdoulline, Rebecca C Wade

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 384 KB

english, 2007

11

Biomolecular diffusional association

Razif R. Gabdoulline, Rebecca C. Wade

Journal:

Current Opinion in Structural Biology

Year:

2002

Language:

english

File:

PDF, 129 KB

english, 2002

12

MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins

Razif R. Gabdoulline, Rebecca C. Wade, Dirk Walther

Journal:

Trends in Biochemical Sciences

Year:

1999

Language:

english

File:

PDF, 512 KB

english, 1999

13

qPIPSA: Relating enzymatic kinetic parameters and interaction fields

Razif R Gabdoulline, Matthias Stein, Rebecca C Wade

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 783 KB

english, 2007

14

Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin

Adrian H Elcock, Razif R Gabdoulline, Rebecca C Wade, J.Andrew McCammon

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 347 KB

english, 1999

15

Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations

Razif R. Gabdoulline, Rebecca C. Wade

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 737 KB

english, 2001

16

Brownian Dynamics Simulation of Protein–Protein Diffusional Encounter

Razif R. Gabdoulline, Rebecca C. Wade

Journal:

Year:

1998

Language:

english

File:

PDF, 464 KB

english, 1998

17

Electrostatic Analysis and Brownian Dynamics Simulation of the Association of Plastocyanin and Cytochrome F

De Rienzo, Francesca, Gabdoulline, Razif R., Menziani, M. Cristina, De Benedetti, Pier G., Wade, Rebecca C.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 348 KB

english, 2001

18

Concerted Simulations Reveal How Peroxidase Compound III Formation Results in Cellular Oscillations

Gabdoulline, Razif R., Kummer, Ursula, Olsen, Lars F., Wade, Rebecca C.

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 328 KB

english, 2003

19

Brownian Dynamics Simulation of Protein Solutions: Structural and Dynamical Properties

Mereghetti, Paolo, Gabdoulline, Razif R., Wade, Rebecca C.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 795 KB

english, 2010

20

Diffusional Encounter of Barnase and Barstar

Spaar, Alexander, Dammer, Christian, Gabdoulline, Razif R., Wade, Rebecca C., Helms, Volkhard

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 510 KB

english, 2006

21

How Optimal Are the Binding Energetics of Barnase and Barstar?

Wang, Ting, Tomic, Sanja, Gabdoulline, Razif R., Wade, Rebecca C.

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 431 KB

english, 2004

22

On the Contributions of Diffusion and Thermal Activation to Electron Transfer between Phormidium laminosum Plastocyanin and Cytochrome f : Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Events

Gabdoulline, Razif R., Wade, Rebecca C.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 2.67 MB

english, 2009

23

Comparison of the Structures of Dimyristoylphosphatidylcholine in the Presence and Absence of Cholesterol by Molecular Dynamics Simulations

Gabdoulline, Razif R., Vanderkooi, Garret, Zheng, Chong

Journal:

Journal of Physical Chemistry

Year:

1996

Language:

english

File:

PDF, 331 KB

english, 1996

24

Electrostatic Steering and Ionic Tethering in Enzyme-Ligand Binding: Insights from Simulations

Rebecca C. Wade, Razif R. Gabdoulline, Susanna K. Ludemann and Valere Lounnas

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 2.23 MB

english, 1998

25

Comparison of the Binding and Reactivity of Plant and Mammalian Peroxidases to Indole Derivatives by Computational Docking †

Hallingbäck, Henrik R., Gabdoulline, Razif R., Wade, Rebecca C.

Journal:

Year:

2006

Language:

english

File:

PDF, 631 KB

english, 2006

26

Calculating enzyme kinetic parameters from protein structures

Stein, Matthias, Gabdoulline, Razif R., Wade, Rebecca C.

Journal:

Biochemical Society Transactions

Year:

2008

Language:

english

File:

PDF, 165 KB

english, 2008

27

Individual outcome prediction for myelodysplastic syndrome (MDS) and secondary acute myeloid leukemia from MDS after allogeneic hematopoietic cell transplantation

Heuser, Michael, Gabdoulline, Razif, Löffeld, Patrick, Dobbernack, Vera, Kreimeyer, Henriette, Pankratz, Mira, Flintrop, Madita, Liebich, Alessandro, Klesse, Sabrina, Panagiota, Victoria, Stadler, Mic

Journal:

Annals of Hematology

Year:

2017

Language:

english

File:

PDF, 3.81 MB

english, 2017

28

Growth factor independence 1b. A key player in the genesis and maintenance of acute myeloid leukaemia and myelodysplastic syndrome

Thivakaran, Aniththa, Botezatu, Lacramiora, Hönes, Judith M., Schütte, Judith, Vassen, Lothar, Al-Matary, Yahya S., Patnana, Pradeep, Zeller, Amos, Heuser, Michael, Thol, Felicitas, Gabdoulline, Razif

Journal:

Year:

2018

Language:

english

File:

PDF, 4.27 MB

english, 2018

29

ASXL1/EZH2 mutations promote clonal expansion of neoplastic HSC and impair erythropoiesis in PMF

Triviai, Ioanna, Zeschke, Silke, Rentel, Jan, Spanakis, Marios, Scherer, Theo, Gabdoulline, Razif, Panagiota, Victoria, Thol, Felicitas, Heuser, Michael, Stocking, Carol, Kröger, Nicolaus

Journal:

Year:

2018

Language:

english

File:

PDF, 2.38 MB

english, 2018

30

Measurable residual disease (MRD) monitoring by NGS before allogeneic hematopoietic cell transplantation in AML

Thol, Felicitas, Gabdoulline, Razif, Liebich, Alessandro, Klement, Piroska, Schiller, Johannes, Kandziora, Christian, Hambach, Lothar, Stadler, Michael, Koenecke, Christian, Flintrop, Madita, Pankratz

Journal:

Year:

2018

Language:

english

File:

PDF, 740 KB

english, 2018

31

Synergistic activity of IDH1 inhibitor BAY1436032 with azacitidine in IDH1 mutant acute myeloid leukemia

Chaturvedi, Anuhar, Gupta, Charu, Gabdoulline, Razif, Borchert, Nora M., Goparaju, Ramya, Kaulfuss, Stefan, GÃ¶rlich, Kerstin, Schottmann, Renate, Othman, Basem, Welzenbach, Julia, Panknin, Olaf, Wagn

Journal:

Year:

2020

File:

PDF, 2.43 MB

2020

32

Effective drug treatment identified by in vivo screening in a transplantable patient-derived xenograft model of chronic myelomonocytic leukemia

Kloos, Arnold, Mintzas, Konstantinos, Winckler, Lina, Gabdoulline, Razif, Alwie, Yasmine, Jyotsana, Nidhi, Kattre, Nadine, Schottmann, Renate, Scherr, Michaela, Gupta, Charu, Adams, Felix F., Schwarze

Journal:

Year:

2020

File:

PDF, 1.31 MB

2020

33

Risk of tumor lysis syndrome in patients with acute myeloid leukemia treated with venetoclax-containing regimens without dose ramp-up

Shahswar, Rabia, Beutel, Gernot, Gabdoulline, Razif, Koenecke, Christian, Markel, Dominik, Eder, Matthias, Stadler, Michael, Gohring, Gudrun, Schlegelberger, Brigitte, Trummer, Arne, Krauter, Juergen,

Journal:

Annals of Hematology

Year:

2020

File:

PDF, 487 KB

2020

34

IDH1/2 mutations in acute myeloid leukemia patients and risk of coronary artery disease and cardiac dysfunctionâa retrospective propensity score analysis

Kattih, Badder, Shirvani, Amir, Klement, Piroska, Garrido, Abel Martin, Gabdoulline, Razif, Liebich, Alessandro, Brandes, Maximilian, Chaturvedi, Anuhar, Seeger, Timon, Thol, Felicitas, GÃ¶hring, Gudr

Journal:

Year:

2020

File:

PDF, 1.76 MB

2020

35

Newly diagnosed isolated myeloid sarcomaâpaired NGS panel analysis of extramedullary tumor and bone marrow

Engel, Nils W., Reinert, Jochim, Borchert, Nora M., Panagiota, Victoria, Gabdoulline, Razif, Thol, Felicitas, Heuser, Michael, Fiedler, Walter

Journal:

Annals of Hematology

Year:

2020

File:

PDF, 231 KB

2020

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